PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1556s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 373aa    MW: 40154.9 Da    PI: 8.1104
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1556s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1754103255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Kalax.1556s0002.1.p  54 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 103
                          59*******.**********93....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-3254117IPR001471AP2/ERF domain
PfamPF008474.1E-1154103IPR001471AP2/ERF domain
PROSITE profilePS5103222.11554111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2954110IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2154111IPR016177DNA-binding domain
CDDcd000188.14E-2954110No hitNo description
PRINTSPR003672.1E-95566IPR001471AP2/ERF domain
PRINTSPR003672.1E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEDAMRRLNG FTHLPPPPPE TTTTTAKKLP NKRPLKDTTN PSSTAAASNG GAMRYRGVRR  60
RPWGRYAAEI RDPQSKERRW LGTFDTAEEA ACAYDCAARA MRGLKARTNF VYPASPPPHH  120
YAAAAEPYFM SAFHFPKMHS YRSAPSWSAS PAGSGFGLGA ADYIPGYLKP SYNNNNINHR  180
DSMTRPGPGC EIRIPDMSYN AFSTSDSTSV TPGSNASSSM VTTFTGPAVS KALILPATAV  240
SDVDCGFFKK EPPYAGLLEE IIQGFVPLPE LRDPHVNNPD ASIYNSRSLD FPTAASLGRY  300
SLGEDCLVSD FNGLQQQQQS QKVNGVVNGG CYGGNNGLIM NGTTPFGVES YVGELGTSGM  360
MVLDGGFEFQ RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1655110662ATERF1
3gcc_A1e-1655110662ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.15e-12DORNROSCHEN-like